PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003475
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family AP2
Protein Properties Length: 245aa    MW: 26499.7 Da    PI: 5.7965
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-793133725PU_refplantGDBView CDS
gnl|UG|Sof#S17303045PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.21.7e-0730691555
        AP2 15 WvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
               W++     ++ g    +k  +lg+f t+eeAa+a++  + k++g
  Sof003475 30 WAVA---GKD-GrvaGNKDLYLGTFSTEEEAAEAYDITAIKFRG 69
               7766...444.335556***********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.813777IPR001471AP2/ERF domain
SMARTSM003801.0E-83583IPR001471AP2/ERF domain
CDDcd000189.26E-144078No hitNo description
SuperFamilySSF541711.63E-94078IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-104277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
XRTDGPGLTG STHACGCFYL QRCNQTSPAW AVAGKDGRVA GNKDLYLGTF STEEEAAEAY  60
DITAIKFRGL NAGTNFEIRR YNVESIMSSN IPMGSMSVGG RSNKALESPP SGSPDAIPVE  120
ASTAPLFAAL PVKYDQQQQD YLSMLTLQHH QQGNLQGLGF GLYSSGVNLD FANSHGTVSS  180
MTRCYVNGGT XFSHQQHQHH QQLQDQQQCE NETQQSSNSC FSLPFATPIA FNGSYESSMT  240
AGPLW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.106350.0bud| crown| leaf| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447241.11e-116hypothetical protein SORBIDRAFT_06g031120
SwissprotQ6PQQ35e-26AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLC5Y9G71e-116C5Y9G7_SORBI; Putative uncharacterized protein Sb06g031120
STRINGSb06g031120.11e-116(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.15e-26AINTEGUMENTA-like 5